{"id":2128,"date":"2025-11-16T15:54:17","date_gmt":"2025-11-16T15:54:17","guid":{"rendered":"https:\/\/cbds.montes.upm.es\/?p=2128"},"modified":"2026-02-06T10:36:14","modified_gmt":"2026-02-06T10:36:14","slug":"ulmus-minor-response-to-dutch-elm-disease-de-novo-transcriptome-assembly-and-annotation","status":"publish","type":"post","link":"https:\/\/cbds.montes.upm.es\/?p=2128","title":{"rendered":"Ulmus minor response to Dutch elm disease: de novo transcriptome assembly and annotation"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-post\" data-elementor-id=\"2128\" class=\"elementor elementor-2128\" data-elementor-post-type=\"post\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-72f3beba elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"72f3beba\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-2547a241\" data-id=\"2547a241\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-24263cee elementor-widget elementor-widget-text-editor\" data-id=\"24263cee\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p><strong>Autores:<\/strong><\/p>\n<div class=\"accordion-tabbed__tab-mobile accordion__closed \">Chano V, Sobrino-Plata J, Mart\u00ednez-Arias C, Collada C, Rodr\u00edguez-Calcerrada J, Mart\u00edn JA<\/div>\n<p><!-- \/wp:paragraph --><!-- wp:paragraph --><\/p>\n<p><strong>Publicaci\u00f3n:<\/strong> Scientific data. 2025<\/p>\n<p><!-- \/wp:paragraph --><!-- wp:paragraph --><\/p>\n<p><strong>Enlace DOI: <a href=\"https:\/\/doi.org\/10.1038\/s41597-025-05539-y\">https:\/\/doi.org\/10.1016\/j.ecolind.2025.114367<\/a><\/strong><\/p>\n<p><!-- \/wp:paragraph --><!-- wp:paragraph --><\/p>\n<p><strong>Resumen:<\/strong>\u00a0<\/p>\n<div class=\"article-section__content en main\">Dutch elm disease (DED), caused by <i>Ophiostoma novo-ulmi<\/i> (ONU), has devastated elm populations across Europe and North America since the 20<sup>th<\/sup> century. In this work, a <i>de novo<\/i> transcriptome assembly of <i>Ulmus minor<\/i> in response to ONU is presented. We used two DED-resistant genotypes, MDV2.3 and VAD2, and one DED-susceptible genotype, MDV1, to capture responses to ONU at four time points post-inoculation (6, 24, 72, and 144\u2009hours). RNA from collected samples was isolated and sequenced producing 60.88\u2009M 100\u2009bp paired-end reads per sample. We performed a <i>de novo<\/i> transcriptome assembly combining data from the three genotypes. The assembly was functionally annotated and validated through differential gene expression analysis of the response. This dataset provides a valuable resource for studying molecular mechanisms of DED resistance in elms, contributing to broadening our understanding of tree immunity and facilitating potential applications in functional annotation of future genome assemblies.<\/div>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Autores: Chano V, Sobrino-Plata J, Mart\u00ednez-Arias C, Collada C, Rodr\u00edguez-Calcerrada J, Mart\u00edn JA Publicaci\u00f3n: Scientific data. 2025 Enlace DOI: https:\/\/doi.org\/10.1016\/j.ecolind.2025.114367 Resumen:\u00a0 Dutch elm disease (DED), caused by Ophiostoma novo-ulmi (ONU), has devastated elm populations across Europe and North America since the 20th century. In this work, a de novo transcriptome assembly of Ulmus minor in [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":2130,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[9],"tags":[],"class_list":["post-2128","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-articulos"],"_links":{"self":[{"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=\/wp\/v2\/posts\/2128","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2128"}],"version-history":[{"count":8,"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=\/wp\/v2\/posts\/2128\/revisions"}],"predecessor-version":[{"id":2409,"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=\/wp\/v2\/posts\/2128\/revisions\/2409"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=\/wp\/v2\/media\/2130"}],"wp:attachment":[{"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2128"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2128"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/cbds.montes.upm.es\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2128"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}